Add EmoSet training and evaluation

.idea/.gitignore

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+# Default ignored files
+/shelf/
+/workspace.xml
+# Ignored default folder with query files
+/queries/
+# Datasource local storage ignored files
+/dataSources/
+/dataSources.local.xml
+# Editor-based HTTP Client requests
+/httpRequests/

.idea/Thesis.iml

@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<module type="PYTHON_MODULE" version="4">
+  <component name="NewModuleRootManager">
+    <content url="file://$MODULE_DIR$" />
+    <orderEntry type="jdk" jdkName="Python 3.12" jdkType="Python SDK" />
+    <orderEntry type="sourceFolder" forTests="false" />
+  </component>
+</module>

.idea/inspectionProfiles/profiles_settings.xml

@@ -0,0 +1,6 @@
+<component name="InspectionProjectProfileManager">
+  <settings>
+    <option name="USE_PROJECT_PROFILE" value="false" />
+    <version value="1.0" />
+  </settings>
+</component>

.idea/misc.xml

@@ -0,0 +1,7 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="Black">
+    <option name="sdkName" value="Python 3.12" />
+  </component>
+  <component name="ProjectRootManager" version="2" project-jdk-name="Python 3.12" project-jdk-type="Python SDK" />
+</project>

.idea/modules.xml

@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="ProjectModuleManager">
+    <modules>
+      <module fileurl="file://$PROJECT_DIR$/.idea/Thesis.iml" filepath="$PROJECT_DIR$/.idea/Thesis.iml" />
+    </modules>
+  </component>
+</project>

.idea/vcs.xml

@@ -0,0 +1,6 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="VcsDirectoryMappings">
+    <mapping directory="" vcs="Git" />
+  </component>
+</project>

CACHEDIR.TAG

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+Signature: 8a477f597d28d172789f06886806bc55
+# This file is a cache directory tag created by Python virtualenv.
+# For information about cache directory tags, see:
+#   https://bford.info/cachedir/

bin/activate

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+# This file must be used with "source bin/activate" *from bash*
+# you cannot run it directly
+
+
+if [ "${BASH_SOURCE-}" = "$0" ]; then
+    echo "You must source this script: \$ source $0" >&2
+    exit 33
+fi
+
+deactivate () {
+    unset -f pydoc >/dev/null 2>&1 || true
+
+    # reset old environment variables
+    # ! [ -z ${VAR+_} ] returns true if VAR is declared at all
+    if ! [ -z "${_OLD_VIRTUAL_PATH:+_}" ] ; then
+        PATH="$_OLD_VIRTUAL_PATH"
+        export PATH
+        unset _OLD_VIRTUAL_PATH
+    fi
+    if ! [ -z "${_OLD_VIRTUAL_PYTHONHOME+_}" ] ; then
+        PYTHONHOME="$_OLD_VIRTUAL_PYTHONHOME"
+        export PYTHONHOME
+        unset _OLD_VIRTUAL_PYTHONHOME
+    fi
+
+    # The hash command must be called to get it to forget past
+    # commands. Without forgetting past commands the $PATH changes
+    # we made may not be respected
+    hash -r 2>/dev/null
+
+    if ! [ -z "${_OLD_VIRTUAL_PS1+_}" ] ; then
+        PS1="$_OLD_VIRTUAL_PS1"
+        export PS1
+        unset _OLD_VIRTUAL_PS1
+    fi
+
+    unset VIRTUAL_ENV
+    unset VIRTUAL_ENV_PROMPT
+    if [ ! "${1-}" = "nondestructive" ] ; then
+    # Self destruct!
+        unset -f deactivate
+    fi
+}
+
+# unset irrelevant variables
+deactivate nondestructive
+
+VIRTUAL_ENV=/home/zin/projects/Thesis
+if ([ "$OSTYPE" = "cygwin" ] || [ "$OSTYPE" = "msys" ]) && $(command -v cygpath &> /dev/null) ; then
+    VIRTUAL_ENV=$(cygpath -u "$VIRTUAL_ENV")
+fi
+export VIRTUAL_ENV
+
+_OLD_VIRTUAL_PATH="$PATH"
+PATH="$VIRTUAL_ENV/"bin":$PATH"
+export PATH
+
+if [ "x"'' != x ] ; then
+    VIRTUAL_ENV_PROMPT=''
+else
+    VIRTUAL_ENV_PROMPT=$(basename "$VIRTUAL_ENV")
+fi
+export VIRTUAL_ENV_PROMPT
+
+# unset PYTHONHOME if set
+if ! [ -z "${PYTHONHOME+_}" ] ; then
+    _OLD_VIRTUAL_PYTHONHOME="$PYTHONHOME"
+    unset PYTHONHOME
+fi
+
+if [ -z "${VIRTUAL_ENV_DISABLE_PROMPT-}" ] ; then
+    _OLD_VIRTUAL_PS1="${PS1-}"
+    PS1="(${VIRTUAL_ENV_PROMPT}) ${PS1-}"
+    export PS1
+fi
+
+# Make sure to unalias pydoc if it's already there
+alias pydoc 2>/dev/null >/dev/null && unalias pydoc || true
+
+pydoc () {
+    python -m pydoc "$@"
+}
+
+# The hash command must be called to get it to forget past
+# commands. Without forgetting past commands the $PATH changes
+# we made may not be respected
+hash -r 2>/dev/null || true

bin/activate.csh

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+# This file must be used with "source bin/activate.csh" *from csh*.
+# You cannot run it directly.
+# Created by Davide Di Blasi <davidedb@gmail.com>.
+
+set newline='\
+'
+
+alias deactivate 'test $?_OLD_VIRTUAL_PATH != 0 && setenv PATH "$_OLD_VIRTUAL_PATH:q" && unset _OLD_VIRTUAL_PATH; rehash; test $?_OLD_VIRTUAL_PROMPT != 0 && set prompt="$_OLD_VIRTUAL_PROMPT:q" && unset _OLD_VIRTUAL_PROMPT; unsetenv VIRTUAL_ENV; unsetenv VIRTUAL_ENV_PROMPT; test "\!:*" != "nondestructive" && unalias deactivate && unalias pydoc'
+
+# Unset irrelevant variables.
+deactivate nondestructive
+
+setenv VIRTUAL_ENV /home/zin/projects/Thesis
+
+set _OLD_VIRTUAL_PATH="$PATH:q"
+setenv PATH "$VIRTUAL_ENV:q/"bin":$PATH:q"
+
+
+
+if ('' != "") then
+    setenv VIRTUAL_ENV_PROMPT ''
+else
+    setenv VIRTUAL_ENV_PROMPT "$VIRTUAL_ENV:t:q"
+endif
+
+if ( $?VIRTUAL_ENV_DISABLE_PROMPT ) then
+    if ( $VIRTUAL_ENV_DISABLE_PROMPT == "" ) then
+        set do_prompt = "1"
+    else
+        set do_prompt = "0"
+    endif
+else
+    set do_prompt = "1"
+endif
+
+if ( $do_prompt == "1" ) then
+    # Could be in a non-interactive environment,
+    # in which case, $prompt is undefined and we wouldn't
+    # care about the prompt anyway.
+    if ( $?prompt ) then
+        set _OLD_VIRTUAL_PROMPT="$prompt:q"
+        if ( "$prompt:q" =~ *"$newline:q"* ) then
+            :
+        else
+            set prompt = '('"$VIRTUAL_ENV_PROMPT:q"') '"$prompt:q"
+        endif
+    endif
+endif
+
+unset env_name
+unset do_prompt
+
+alias pydoc python -m pydoc
+
+rehash

bin/activate.fish

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+# This file must be used using `source bin/activate.fish` *within a running fish ( http://fishshell.com ) session*.
+# Do not run it directly.
+
+function _bashify_path -d "Converts a fish path to something bash can recognize"
+    set fishy_path $argv
+    set bashy_path $fishy_path[1]
+    for path_part in $fishy_path[2..-1]
+        set bashy_path "$bashy_path:$path_part"
+    end
+    echo $bashy_path
+end
+
+function _fishify_path -d "Converts a bash path to something fish can recognize"
+    echo $argv | tr ':' '\n'
+end
+
+function deactivate -d 'Exit virtualenv mode and return to the normal environment.'
+    # reset old environment variables
+    if test -n "$_OLD_VIRTUAL_PATH"
+        # https://github.com/fish-shell/fish-shell/issues/436 altered PATH handling
+        if test (echo $FISH_VERSION | head -c 1) -lt 3
+            set -gx PATH (_fishify_path "$_OLD_VIRTUAL_PATH")
+        else
+            set -gx PATH $_OLD_VIRTUAL_PATH
+        end
+        set -e _OLD_VIRTUAL_PATH
+    end
+
+    if test -n "$_OLD_VIRTUAL_PYTHONHOME"
+        set -gx PYTHONHOME "$_OLD_VIRTUAL_PYTHONHOME"
+        set -e _OLD_VIRTUAL_PYTHONHOME
+    end
+
+    if test -n "$_OLD_FISH_PROMPT_OVERRIDE"
+       and functions -q _old_fish_prompt
+        # Set an empty local `$fish_function_path` to allow the removal of `fish_prompt` using `functions -e`.
+        set -l fish_function_path
+
+        # Erase virtualenv's `fish_prompt` and restore the original.
+        functions -e fish_prompt
+        functions -c _old_fish_prompt fish_prompt
+        functions -e _old_fish_prompt
+        set -e _OLD_FISH_PROMPT_OVERRIDE
+    end
+
+    set -e VIRTUAL_ENV
+    set -e VIRTUAL_ENV_PROMPT
+
+    if test "$argv[1]" != 'nondestructive'
+        # Self-destruct!
+        functions -e pydoc
+        functions -e deactivate
+        functions -e _bashify_path
+        functions -e _fishify_path
+    end
+end
+
+# Unset irrelevant variables.
+deactivate nondestructive
+
+set -gx VIRTUAL_ENV /home/zin/projects/Thesis
+
+# https://github.com/fish-shell/fish-shell/issues/436 altered PATH handling
+if test (echo $FISH_VERSION | head -c 1) -lt 3
+    set -gx _OLD_VIRTUAL_PATH (_bashify_path $PATH)
+else
+    set -gx _OLD_VIRTUAL_PATH $PATH
+end
+set -gx PATH "$VIRTUAL_ENV"'/'bin $PATH
+
+# Prompt override provided?
+# If not, just use the environment name.
+if test -n ''
+    set -gx VIRTUAL_ENV_PROMPT ''
+else
+    set -gx VIRTUAL_ENV_PROMPT (basename "$VIRTUAL_ENV")
+end
+
+# Unset `$PYTHONHOME` if set.
+if set -q PYTHONHOME
+    set -gx _OLD_VIRTUAL_PYTHONHOME $PYTHONHOME
+    set -e PYTHONHOME
+end
+
+function pydoc
+    python -m pydoc $argv
+end
+
+if test -z "$VIRTUAL_ENV_DISABLE_PROMPT"
+    # Copy the current `fish_prompt` function as `_old_fish_prompt`.
+    functions -c fish_prompt _old_fish_prompt
+
+    function fish_prompt
+        # Run the user's prompt first; it might depend on (pipe)status.
+        set -l prompt (_old_fish_prompt)
+
+        printf '(%s) ' $VIRTUAL_ENV_PROMPT
+
+        string join -- \n $prompt # handle multi-line prompts
+    end
+
+    set -gx _OLD_FISH_PROMPT_OVERRIDE "$VIRTUAL_ENV"
+end

bin/activate.nu

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+# virtualenv activation module
+# Activate with `overlay use activate.nu`
+# Deactivate with `deactivate`, as usual
+#
+# To customize the overlay name, you can call `overlay use activate.nu as foo`,
+# but then simply `deactivate` won't work because it is just an alias to hide
+# the "activate" overlay. You'd need to call `overlay hide foo` manually.
+
+export-env {
+    def is-string [x] {
+        ($x | describe) == 'string'
+    }
+
+    def has-env [...names] {
+        $names | each {|n|
+            $n in $env
+        } | all {|i| $i == true}
+    }
+
+    # Emulates a `test -z`, but better as it handles e.g 'false'
+    def is-env-true [name: string] {
+      if (has-env $name) {
+        # Try to parse 'true', '0', '1', and fail if not convertible
+        let parsed = (do -i { $env | get $name | into bool })
+        if ($parsed | describe) == 'bool' {
+          $parsed
+        } else {
+          not ($env | get -i $name | is-empty)
+        }
+      } else {
+        false
+      }
+    }
+
+    let virtual_env = r#'/home/zin/projects/Thesis'#
+    let bin = r#'bin'#
+
+    let is_windows = ($nu.os-info.family) == 'windows'
+    let path_name = (if (has-env 'Path') {
+            'Path'
+        } else {
+            'PATH'
+        }
+    )
+
+    let venv_path = ([$virtual_env $bin] | path join)
+    let new_path = ($env | get $path_name | prepend $venv_path)
+
+    # If there is no default prompt, then use the env name instead
+    let virtual_env_prompt = (if (r#''# | is-empty) {
+        ($virtual_env | path basename)
+    } else {
+        r#''#
+    })
+
+    let new_env = {
+        $path_name         : $new_path
+        VIRTUAL_ENV        : $virtual_env
+        VIRTUAL_ENV_PROMPT : $virtual_env_prompt
+    }
+
+    let new_env = (if (is-env-true 'VIRTUAL_ENV_DISABLE_PROMPT') {
+      $new_env
+    } else {
+      # Creating the new prompt for the session
+      let virtual_prefix = $'(char lparen)($virtual_env_prompt)(char rparen) '
+
+      # Back up the old prompt builder
+      let old_prompt_command = (if (has-env 'PROMPT_COMMAND') {
+              $env.PROMPT_COMMAND
+          } else {
+              ''
+        })
+
+      let new_prompt = (if (has-env 'PROMPT_COMMAND') {
+          if 'closure' in ($old_prompt_command | describe) {
+              {|| $'($virtual_prefix)(do $old_prompt_command)' }
+          } else {
+              {|| $'($virtual_prefix)($old_prompt_command)' }
+          }
+      } else {
+          {|| $'($virtual_prefix)' }
+      })
+
+      $new_env | merge {
+        PROMPT_COMMAND      : $new_prompt
+        VIRTUAL_PREFIX      : $virtual_prefix
+      }
+    })
+
+    # Environment variables that will be loaded as the virtual env
+    load-env $new_env
+}
+
+export alias pydoc = python -m pydoc
+export alias deactivate = overlay hide activate

bin/activate.ps1

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+$script:THIS_PATH = $myinvocation.mycommand.path
+$script:BASE_DIR = Split-Path (Resolve-Path "$THIS_PATH/..") -Parent
+
+function global:deactivate([switch] $NonDestructive) {
+    if (Test-Path variable:_OLD_VIRTUAL_PATH) {
+        $env:PATH = $variable:_OLD_VIRTUAL_PATH
+        Remove-Variable "_OLD_VIRTUAL_PATH" -Scope global
+    }
+
+    if (Test-Path function:_old_virtual_prompt) {
+        $function:prompt = $function:_old_virtual_prompt
+        Remove-Item function:\_old_virtual_prompt
+    }
+
+    if ($env:VIRTUAL_ENV) {
+        Remove-Item env:VIRTUAL_ENV -ErrorAction SilentlyContinue
+    }
+
+    if ($env:VIRTUAL_ENV_PROMPT) {
+        Remove-Item env:VIRTUAL_ENV_PROMPT -ErrorAction SilentlyContinue
+    }
+
+    if (!$NonDestructive) {
+        # Self destruct!
+        Remove-Item function:deactivate
+        Remove-Item function:pydoc
+    }
+}
+
+function global:pydoc {
+    python -m pydoc $args
+}
+
+# unset irrelevant variables
+deactivate -nondestructive
+
+$VIRTUAL_ENV = $BASE_DIR
+$env:VIRTUAL_ENV = $VIRTUAL_ENV
+
+if ('' -ne "") {
+    $env:VIRTUAL_ENV_PROMPT = ''
+}
+else {
+    $env:VIRTUAL_ENV_PROMPT = $( Split-Path $env:VIRTUAL_ENV -Leaf )
+}
+
+New-Variable -Scope global -Name _OLD_VIRTUAL_PATH -Value $env:PATH
+
+$env:PATH = "$env:VIRTUAL_ENV/" + 'bin' + ':' + $env:PATH
+if (!$env:VIRTUAL_ENV_DISABLE_PROMPT) {
+    function global:_old_virtual_prompt {
+        ""
+    }
+    $function:_old_virtual_prompt = $function:prompt
+
+    function global:prompt {
+        # Add the custom prefix to the existing prompt
+        $previous_prompt_value = & $function:_old_virtual_prompt
+        ("(" + $env:VIRTUAL_ENV_PROMPT + ") " + $previous_prompt_value)
+    }
+}

bin/activate_this.py

@@ -0,0 +1,38 @@
+"""
+Activate virtualenv for current interpreter:
+
+import runpy
+runpy.run_path(this_file)
+
+This can be used when you must use an existing Python interpreter, not the virtualenv bin/python.
+"""  # noqa: D415
+
+from __future__ import annotations
+
+import os
+import site
+import sys
+
+try:
+    abs_file = os.path.abspath(__file__)
+except NameError as exc:
+    msg = "You must use import runpy; runpy.run_path(this_file)"
+    raise AssertionError(msg) from exc
+
+bin_dir = os.path.dirname(abs_file)
+base = bin_dir[: -len('bin') - 1]  # strip away the bin part from the __file__, plus the path separator
+
+# prepend bin to PATH (this file is inside the bin directory)
+os.environ["PATH"] = os.pathsep.join([bin_dir, *os.environ.get("PATH", "").split(os.pathsep)])
+os.environ["VIRTUAL_ENV"] = base  # virtual env is right above bin directory
+os.environ["VIRTUAL_ENV_PROMPT"] = '' or os.path.basename(base)
+
+# add the virtual environments libraries to the host python import mechanism
+prev_length = len(sys.path)
+for lib in '../lib/python3.12/site-packages'.split(os.pathsep):
+    path = os.path.realpath(os.path.join(bin_dir, lib))
+    site.addsitedir(path.decode("utf-8") if '' else path)
+sys.path[:] = sys.path[prev_length:] + sys.path[0:prev_length]
+
+sys.real_prefix = sys.prefix
+sys.prefix = base

bin/debugpy

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from debugpy.server.cli import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/debugpy-adapter

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from debugpy.adapter.__main__ import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/f2py

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from numpy.f2py.f2py2e import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/fonttools

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from fontTools.__main__ import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/httpx

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from httpx import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/ipython

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from IPython import start_ipython
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(start_ipython())

bin/ipython3

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from IPython import start_ipython
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(start_ipython())

bin/isympy

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from isympy import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/jlpm

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from jupyterlab.jlpmapp import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/jsonpointer

@@ -0,0 +1,67 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+
+
+import argparse
+import json
+import sys
+
+import jsonpointer
+
+parser = argparse.ArgumentParser(
+    description='Resolve a JSON pointer on JSON files')
+
+# Accept pointer as argument or as file
+ptr_group = parser.add_mutually_exclusive_group(required=True)
+
+ptr_group.add_argument('-f', '--pointer-file', type=argparse.FileType('r'),
+                       nargs='?',
+                       help='File containing a JSON pointer expression')
+
+ptr_group.add_argument('POINTER', type=str, nargs='?',
+                       help='A JSON pointer expression')
+
+parser.add_argument('FILE', type=argparse.FileType('r'), nargs='+',
+                    help='Files for which the pointer should be resolved')
+parser.add_argument('--indent', type=int, default=None,
+                    help='Indent output by n spaces')
+parser.add_argument('-v', '--version', action='version',
+                    version='%(prog)s ' + jsonpointer.__version__)
+
+
+def main():
+    try:
+        resolve_files()
+    except KeyboardInterrupt:
+        sys.exit(1)
+
+
+def parse_pointer(args):
+    if args.POINTER:
+        ptr = args.POINTER
+    elif args.pointer_file:
+        ptr = args.pointer_file.read().strip()
+    else:
+        parser.print_usage()
+        sys.exit(1)
+
+    return ptr
+
+
+def resolve_files():
+    """ Resolve a JSON pointer on JSON files """
+    args = parser.parse_args()
+
+    ptr = parse_pointer(args)
+
+    for f in args.FILE:
+        doc = json.load(f)
+        try:
+            result = jsonpointer.resolve_pointer(doc, ptr)
+            print(json.dumps(result, indent=args.indent))
+        except jsonpointer.JsonPointerException as e:
+            print('Could not resolve pointer: %s' % str(e), file=sys.stderr)
+
+
+if __name__ == "__main__":
+    main()

bin/jsonschema

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from jsonschema.cli import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/jupyter

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from jupyter_core.command import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/jupyter-dejavu

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from nbconvert.nbconvertapp import dejavu_main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(dejavu_main())

bin/jupyter-events

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from jupyter_events.cli import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/jupyter-execute

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from nbclient.cli import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/jupyter-kernel

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from jupyter_client.kernelapp import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/jupyter-kernelspec

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from jupyter_client.kernelspecapp import KernelSpecApp
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(KernelSpecApp.launch_instance())

bin/jupyter-lab

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from jupyterlab.labapp import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/jupyter-labextension

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from jupyterlab.labextensions import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/jupyter-labhub

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from jupyterlab.labhubapp import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/jupyter-migrate

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from jupyter_core.migrate import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/jupyter-nbconvert

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from nbconvert.nbconvertapp import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/jupyter-run

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from jupyter_client.runapp import RunApp
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(RunApp.launch_instance())

bin/jupyter-server

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from jupyter_server.serverapp import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/jupyter-troubleshoot

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from jupyter_core.troubleshoot import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/jupyter-trust

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from nbformat.sign import TrustNotebookApp
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(TrustNotebookApp.launch_instance())

bin/normalizer

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from charset_normalizer.cli import cli_detect
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(cli_detect())

bin/numpy-config

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from numpy._configtool import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/pip

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from pip._internal.cli.main import main
+if __name__ == '__main__':
+    sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0])
+    sys.exit(main())

bin/pip-3.12

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from pip._internal.cli.main import main
+if __name__ == '__main__':
+    sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0])
+    sys.exit(main())

bin/pip3

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from pip._internal.cli.main import main
+if __name__ == '__main__':
+    sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0])
+    sys.exit(main())

bin/pip3.12

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from pip._internal.cli.main import main
+if __name__ == '__main__':
+    sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0])
+    sys.exit(main())

bin/proton

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from triton.profiler.proton import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/proton-viewer

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from triton.profiler.viewer import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/pybabel

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from babel.messages.frontend import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/pyftmerge

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from fontTools.merge import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/pyftsubset

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from fontTools.subset import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/pygmentize

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from pygments.cmdline import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/pyjson5

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from json5.tool import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/python

@@ -0,0 +1 @@
+/usr/bin/python3

bin/python3

@@ -0,0 +1 @@
+python

bin/python3.12

@@ -0,0 +1 @@
+python

bin/send2trash

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from send2trash.__main__ import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/torchfrtrace

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from tools.flight_recorder.fr_trace import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/torchrun

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from torch.distributed.run import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/tqdm

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from tqdm.cli import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/ttx

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from fontTools.ttx import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

bin/wsdump

@@ -0,0 +1,8 @@
+#!/home/zin/projects/Thesis/bin/python
+# -*- coding: utf-8 -*-
+import re
+import sys
+from websocket._wsdump import main
+if __name__ == "__main__":
+    sys.argv[0] = re.sub(r"(-script\.pyw|\.exe)?$", "", sys.argv[0])
+    sys.exit(main())

etc/jupyter/jupyter_notebook_config.d/jupyterlab.json

@@ -0,0 +1,7 @@
+{
+  "NotebookApp": {
+    "nbserver_extensions": {
+      "jupyterlab": true
+    }
+  }
+}

etc/jupyter/jupyter_server_config.d/jupyter-lsp-jupyter-server.json

@@ -0,0 +1,7 @@
+{
+  "ServerApp": {
+    "jpserver_extensions": {
+      "jupyter_lsp": true
+    }
+  }
+}

etc/jupyter/jupyter_server_config.d/jupyter_server_terminals.json

@@ -0,0 +1,7 @@
+{
+  "ServerApp": {
+    "jpserver_extensions": {
+      "jupyter_server_terminals": true
+    }
+  }
+}

etc/jupyter/jupyter_server_config.d/jupyterlab.json

@@ -0,0 +1,7 @@
+{
+  "ServerApp": {
+    "jpserver_extensions": {
+      "jupyterlab": true
+    }
+  }
+}

etc/jupyter/jupyter_server_config.d/notebook_shim.json

@@ -0,0 +1,7 @@
+{
+    "ServerApp": {
+        "jpserver_extensions": {
+            "notebook_shim": true
+        }
+    }
+}

pyproject.toml

@@ -0,0 +1,28 @@
+[project]
+name = "thesis"
+version = "0.0.1"
+description = "Моя диссертационная работа"
+authors = [
+    {name = "Zin"}
+]
+readme = "README.md"
+requires-python = ">=3.11,<3.15"
+dependencies = [
+    "torch (==2.9.1)",
+    "torchvision (==0.24.1)",
+    "matplotlib (>=3.10.8,<4.0.0)",
+    "jupyterlab (>=4.5.1,<5.0.0)",
+    "ipykernel (>=7.1.0,<8.0.0)",
+    "torchaudio (>=2.9.1,<3.0.0)",
+    "numpy (>=2.4.1,<3.0.0)",
+    "pandas (>=2.3.3,<3.0.0)",
+    "scikit-learn (>=1.8.0,<2.0.0)",
+    "tqdm (>=4.67.1,<5.0.0)",
+    "jupyter (>=1.1.1,<2.0.0)",
+    "findingemo-light (>=1.0.0,<2.0.0)"
+]
+
+
+[build-system]
+requires = ["poetry-core>=2.0.0,<3.0.0"]
+build-backend = "poetry.core.masonry.api"

pyvenv.cfg

@@ -0,0 +1,8 @@
+home = /usr/bin
+implementation = CPython
+version_info = 3.12.3.final.0
+virtualenv = 20.31.2
+include-system-site-packages = false
+base-prefix = /usr
+base-exec-prefix = /usr
+base-executable = /usr/bin/python3.12

share/applications/jupyterlab.desktop

@@ -0,0 +1,11 @@
+[Desktop Entry]
+Name=JupyterLab
+Comment=Run JupyterLab
+Exec=jupyter-lab %f
+Terminal=true
+Type=Application
+Icon=jupyterlab
+StartupNotify=true
+MimeType=application/x-ipynb+json;
+Categories=Development;Education;
+Keywords=python;

share/icons/hicolor/scalable/apps/jupyterlab.svg

@@ -0,0 +1,164 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<svg
+   width="51"
+   height="51"
+   viewBox="0 0 51 51"
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+   inkscape:version="1.2.2 (b0a8486541, 2022-12-01)"
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share/jupyter/kernels/python3/kernel.json

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share/jupyter/lab/schemas/@jupyterlab/application-extension/commands.json

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+{
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+                  }
+                },
+                {
+                  "command": "application:toggle-header",
+                  "rank": 15
+                },
+                {
+                  "type": "separator",
+                  "rank": 50
+                },
+                {
+                  "command": "application:reset-layout",
+                  "rank": 51
+                }
+              ]
+            }
+          },
+          {
+            "type": "separator",
+            "rank": 1
+          }
+        ]
+      }
+    ],
+    "context": [
+      {
+        "command": "application:close",
+        "selector": "#jp-main-dock-panel .lm-DockPanel-tabBar .lm-TabBar-tab",
+        "rank": 4
+      },
+      {
+        "command": "application:close-other-tabs",
+        "selector": "#jp-main-dock-panel .lm-DockPanel-tabBar .lm-TabBar-tab",
+        "rank": 4
+      },
+      {
+        "command": "application:close-all",
+        "selector": "#jp-main-dock-panel .lm-DockPanel-tabBar .lm-TabBar-tab",
+        "rank": 4
+      },
+      {
+        "command": "application:close-right-tabs",
+        "selector": "#jp-main-dock-panel .lm-DockPanel-tabBar .lm-TabBar-tab",
+        "rank": 5
+      },
+      {
+        "command": "__internal:context-menu-info",
+        "selector": "body",
+        "rank": 9007199254740991
+      }
+    ]
+  },
+  "properties": {},
+  "additionalProperties": false,
+  "type": "object"
+}

share/jupyter/lab/schemas/@jupyterlab/application-extension/context-menu.json

@@ -0,0 +1,120 @@
+{
+  "title": "Application Context Menu",
+  "description": "JupyterLab context menu settings.",
+  "jupyter.lab.setting-icon-label": "Application Context Menu",
+  "jupyter.lab.shortcuts": [],
+  "jupyter.lab.transform": true,
+  "properties": {
+    "contextMenu": {
+      "title": "The application context menu.",
+      "description": "Note: To disable a context menu item,\ncopy it to User Preferences and add the\n\"disabled\" key. The following example will disable Download item on files:\n{\n  \"contextMenu\": [\n    {\n      \"command\": \"filebrowser:download\",\n      \"selector\": \".jp-DirListing-item[data-isdir=\\\"false\\\"]\",\n      \"disabled\": true\n    }\n  ]\n}\n\nContext menu description:",
+      "items": {
+        "allOf": [
+          { "$ref": "#/definitions/menuItem" },
+          {
+            "properties": {
+              "selector": {
+                "description": "The CSS selector for the context menu item.",
+                "type": "string"
+              }
+            }
+          }
+        ]
+      },
+      "type": "array",
+      "default": []
+    },
+    "disabled": {
+      "description": "Whether the application context (right-click) menu is disabled",
+      "type": "boolean",
+      "default": false
+    }
+  },
+  "additionalProperties": false,
+  "definitions": {
+    "menu": {
+      "properties": {
+        "disabled": {
+          "description": "Whether the menu is disabled or not",
+          "type": "boolean",
+          "default": false
+        },
+        "icon": {
+          "description": "Menu icon id",
+          "type": "string"
+        },
+        "id": {
+          "description": "Menu unique id",
+          "type": "string",
+          "pattern": "[a-z][a-z0-9\\-_]+"
+        },
+        "items": {
+          "description": "Menu items",
+          "type": "array",
+          "items": {
+            "$ref": "#/definitions/menuItem"
+          }
+        },
+        "label": {
+          "description": "Menu label",
+          "type": "string"
+        },
+        "mnemonic": {
+          "description": "Mnemonic index for the label",
+          "type": "number",
+          "minimum": -1,
+          "default": -1
+        },
+        "rank": {
+          "description": "Menu rank",
+          "type": "number",
+          "minimum": 0
+        }
+      },
+      "required": ["id"],
+      "additionalProperties": false,
+      "type": "object"
+    },
+    "menuItem": {
+      "properties": {
+        "args": {
+          "description": "Command arguments",
+          "type": "object"
+        },
+        "command": {
+          "description": "Command id",
+          "type": "string"
+        },
+        "disabled": {
+          "description": "Whether the item is disabled or not",
+          "type": "boolean",
+          "default": false
+        },
+        "type": {
+          "description": "Item type",
+          "type": "string",
+          "enum": ["command", "submenu", "separator"],
+          "default": "command"
+        },
+        "rank": {
+          "description": "Item rank",
+          "type": "number",
+          "minimum": 0
+        },
+        "submenu": {
+          "description": "Submenu definition",
+          "oneOf": [
+            {
+              "$ref": "#/definitions/menu"
+            },
+            {
+              "type": "null"
+            }
+          ]
+        }
+      },
+      "type": "object"
+    }
+  },
+  "type": "object"
+}

share/jupyter/lab/schemas/@jupyterlab/application-extension/package.json.orig

@@ -0,0 +1,68 @@
+{
+  "name": "@jupyterlab/application-extension",
+  "version": "4.5.1",
+  "description": "JupyterLab - Application Extension",
+  "homepage": "https://github.com/jupyterlab/jupyterlab",
+  "bugs": {
+    "url": "https://github.com/jupyterlab/jupyterlab/issues"
+  },
+  "repository": {
+    "type": "git",
+    "url": "https://github.com/jupyterlab/jupyterlab.git"
+  },
+  "license": "BSD-3-Clause",
+  "author": "Project Jupyter",
+  "sideEffects": [
+    "style/**/*.css",
+    "style/index.js"
+  ],
+  "main": "lib/index.js",
+  "types": "lib/index.d.ts",
+  "style": "style/index.css",
+  "directories": {
+    "lib": "lib/"
+  },
+  "files": [
+    "lib/*.d.ts",
+    "lib/*.js.map",
+    "lib/*.js",
+    "schema/*.json",
+    "style/**/*.css",
+    "style/index.js",
+    "src/**/*.{ts,tsx}"
+  ],
+  "scripts": {
+    "build": "tsc -b",
+    "clean": "rimraf lib && rimraf tsconfig.tsbuildinfo",
+    "watch": "tsc -b --watch"
+  },
+  "dependencies": {
+    "@jupyterlab/application": "^4.5.1",
+    "@jupyterlab/apputils": "^4.6.1",
+    "@jupyterlab/coreutils": "^6.5.1",
+    "@jupyterlab/property-inspector": "^4.5.1",
+    "@jupyterlab/settingregistry": "^4.5.1",
+    "@jupyterlab/statedb": "^4.5.1",
+    "@jupyterlab/statusbar": "^4.5.1",
+    "@jupyterlab/translation": "^4.5.1",
+    "@jupyterlab/ui-components": "^4.5.1",
+    "@lumino/algorithm": "^2.0.4",
+    "@lumino/commands": "^2.3.3",
+    "@lumino/coreutils": "^2.2.2",
+    "@lumino/disposable": "^2.1.5",
+    "@lumino/widgets": "^2.7.2",
+    "react": "^18.2.0"
+  },
+  "devDependencies": {
+    "rimraf": "~5.0.5",
+    "typescript": "~5.5.4"
+  },
+  "publishConfig": {
+    "access": "public"
+  },
+  "jupyterlab": {
+    "extension": true,
+    "schemaDir": "schema"
+  },
+  "styleModule": "style/index.js"
+}

share/jupyter/lab/schemas/@jupyterlab/application-extension/property-inspector.json

@@ -0,0 +1,27 @@
+{
+  "title": "Property Inspector",
+  "description": "Property Inspector Settings.",
+  "jupyter.lab.menus": {
+    "main": [
+      {
+        "id": "jp-mainmenu-view",
+        "items": [
+          {
+            "command": "property-inspector:show-panel",
+            "rank": 2
+          }
+        ]
+      }
+    ]
+  },
+  "jupyter.lab.shortcuts": [
+    {
+      "command": "property-inspector:show-panel",
+      "keys": ["Accel Shift U"],
+      "selector": "body"
+    }
+  ],
+  "properties": {},
+  "additionalProperties": false,
+  "type": "object"
+}

share/jupyter/lab/schemas/@jupyterlab/application-extension/shell.json

@@ -0,0 +1,96 @@
+{
+  "$schema": "http://json-schema.org/draft-07/schema",
+  "title": "JupyterLab Shell",
+  "description": "JupyterLab Shell layout settings.",
+  "jupyter.lab.menus": {
+    "context": [
+      {
+        "command": "sidebar:switch",
+        "selector": ".jp-SideBar .lm-TabBar-tab",
+        "rank": 500
+      }
+    ]
+  },
+  "properties": {
+    "hiddenMode": {
+      "type": "string",
+      "title": "Hidden mode of main panel widgets",
+      "description": "The method for hiding widgets in the main dock panel. Using `scale` will increase performance on Firefox but don't use it with Chrome, Chromium or Edge. Similar performance gains are seen with `contentVisibility` which is only available in Chromium-based browsers.",
+      "enum": ["display", "scale", "contentVisibility"],
+      "default": "display"
+    },
+    "startMode": {
+      "enum": ["", "single", "multiple"],
+      "title": "Start mode: ``, `single` or `multiple`",
+      "description": "The mode under which JupyterLab should start. If empty, the mode will be imposed by the URL",
+      "default": ""
+    },
+    "layout": {
+      "type": "object",
+      "title": "Customize shell widget positioning",
+      "description": "Overrides default widget position in the application layout\ne.g. to position terminals in the right sidebar in multiple documents mode and in the down are in single document mode, {\n  \"single\": { \"Terminal\": { \"area\": \"down\" } },\n  \"multiple\": { \"Terminal\": { \"area\": \"right\" } }\n}.",
+      "properties": {
+        "single": {
+          "$ref": "#/definitions/layout",
+          "default": {
+            "Linked Console": { "area": "down" },
+            "Inspector": { "area": "down" },
+            "Cloned Output": { "area": "down" }
+          }
+        },
+        "multiple": { "$ref": "#/definitions/layout", "default": {} }
+      },
+      "default": {
+        "single": {
+          "Linked Console": { "area": "down" },
+          "Inspector": { "area": "down" },
+          "Cloned Output": { "area": "down" }
+        },
+        "multiple": {}
+      },
+      "additionalProperties": false
+    }
+  },
+  "additionalProperties": false,
+  "type": "object",
+  "definitions": {
+    "layout": {
+      "type": "object",
+      "properties": {
+        "[\\w-]+": {
+          "type": "object",
+          "properties": {
+            "area": {
+              "enum": ["main", "left", "right", "down"]
+            },
+            "options": {
+              "$ref": "#/definitions/options"
+            }
+          },
+          "additionalProperties": false
+        }
+      }
+    },
+    "options": {
+      "type": "object",
+      "properties": {
+        "mode": {
+          "type": "string",
+          "enum": [
+            "split-top",
+            "split-left",
+            "split-right",
+            "split-bottom",
+            "tab-before",
+            "tab-after"
+          ]
+        },
+        "rank": { "type": "number", "minimum": 0 },
+        "ref": {
+          "type": "string",
+          "minLength": 1
+        }
+      }
+    }
+  }
+}

share/jupyter/lab/schemas/@jupyterlab/application-extension/top-bar.json

@@ -0,0 +1,80 @@
+{
+  "title": "Top Bar",
+  "description": "Top Bar settings.",
+  "jupyter.lab.toolbars": {
+    "TopBar": [
+      {
+        "name": "spacer",
+        "type": "spacer",
+        "rank": 50
+      }
+    ]
+  },
+  "jupyter.lab.transform": true,
+  "properties": {
+    "toolbar": {
+      "title": "Top bar items",
+      "description": "Note: To disable a item,\ncopy it to User Preferences and add the\n\"disabled\" key. The following example will disable the user menu:\n{\n  \"toolbar\": [\n    {\n      \"name\": \"user-menu\",\n      \"disabled\": true\n    }\n  ]\n}\n\nTop bar description:",
+      "items": {
+        "$ref": "#/definitions/toolbarItem"
+      },
+      "type": "array",
+      "default": []
+    }
+  },
+  "additionalProperties": false,
+  "type": "object",
+  "definitions": {
+    "toolbarItem": {
+      "properties": {
+        "name": {
+          "title": "Unique name",
+          "type": "string"
+        },
+        "args": {
+          "title": "Command arguments",
+          "type": "object"
+        },
+        "command": {
+          "title": "Command id",
+          "type": "string",
+          "default": ""
+        },
+        "disabled": {
+          "title": "Whether the item is ignored or not",
+          "type": "boolean",
+          "default": false
+        },
+        "icon": {
+          "title": "Item icon id",
+          "description": "If defined, it will override the command icon",
+          "type": "string"
+        },
+        "label": {
+          "title": "Item label",
+          "description": "If defined, it will override the command label",
+          "type": "string"
+        },
+        "caption": {
+          "title": "Item caption",
+          "description": "If defined, it will override the command caption",
+          "type": "string"
+        },
+        "type": {
+          "title": "Item type",
+          "type": "string",
+          "enum": ["command", "spacer"]
+        },
+        "rank": {
+          "title": "Item rank",
+          "type": "number",
+          "minimum": 0,
+          "default": 50
+        }
+      },
+      "required": ["name"],
+      "additionalProperties": false,
+      "type": "object"
+    }
+  }
+}

share/jupyter/lab/schemas/@jupyterlab/apputils-extension/kernels-settings.json

@@ -0,0 +1,27 @@
+{
+  "title": "Kernels",
+  "description": "Kernels and kernel sessions settings",
+  "jupyter.lab.setting-icon": "ui-components:kernel",
+  "jupyter.lab.setting-icon-label": "Kernel",
+  "additionalProperties": false,
+  "properties": {
+    "showStatusBarItem": {
+      "type": "boolean",
+      "title": "Show the status bar item",
+      "description": "Whether to show the running kernels item in the status bar",
+      "default": true
+    },
+    "commsOverSubshells": {
+      "type": "string",
+      "title": "Kernel Comms over subshells",
+      "description": "Whether comm messages should be sent to kernel subshells, if the kernel supports it.",
+      "default": "perCommTarget",
+      "oneOf": [
+        { "const": "disabled", "title": "Disabled" },
+        { "const": "perComm", "title": "One subshell per comm" },
+        { "const": "perCommTarget", "title": "One subshell per comm-target" }
+      ]
+    }
+  },
+  "type": "object"
+}

share/jupyter/lab/schemas/@jupyterlab/apputils-extension/notification.json

@@ -0,0 +1,53 @@
+{
+  "title": "Notifications",
+  "description": "Notifications settings.",
+  "jupyter.lab.setting-icon": "ui-components:bell",
+  "jupyter.lab.menus": {
+    "main": [
+      {
+        "id": "jp-mainmenu-view",
+        "items": [
+          {
+            "type": "separator",
+            "rank": 9.9
+          },
+          {
+            "command": "apputils:display-notifications",
+            "rank": 9.92
+          },
+          {
+            "type": "separator",
+            "rank": 9.99
+          }
+        ]
+      }
+    ]
+  },
+  "additionalProperties": false,
+  "properties": {
+    "checkForUpdates": {
+      "title": "Check for JupyterLab updates",
+      "description": "Whether to check for newer versions of JupyterLab or not. It requires `fetchNews` to be set to Always (`true`) to be active. If `true`, it will make a request to a website.",
+      "type": "boolean",
+      "default": true
+    },
+    "doNotDisturbMode": {
+      "title": "Silence all notifications",
+      "description": "If `true`, no toast notifications will be automatically displayed.",
+      "type": "boolean",
+      "default": false
+    },
+    "fetchNews": {
+      "title": "Fetch official Jupyter news",
+      "description": "Whether to fetch news from the Jupyter news feed. If Always (`true`), it will make a request to a website.",
+      "type": "string",
+      "oneOf": [
+        { "const": "true", "title": "Always" },
+        { "const": "false", "title": "Never" },
+        { "const": "none", "title": "Ask (None)" }
+      ],
+      "default": "none"
+    }
+  },
+  "type": "object"
+}

share/jupyter/lab/schemas/@jupyterlab/apputils-extension/package.json.orig

@@ -0,0 +1,76 @@
+{
+  "name": "@jupyterlab/apputils-extension",
+  "version": "4.5.1",
+  "description": "JupyterLab - Application Utilities Extension",
+  "homepage": "https://github.com/jupyterlab/jupyterlab",
+  "bugs": {
+    "url": "https://github.com/jupyterlab/jupyterlab/issues"
+  },
+  "repository": {
+    "type": "git",
+    "url": "https://github.com/jupyterlab/jupyterlab.git"
+  },
+  "license": "BSD-3-Clause",
+  "author": "Project Jupyter",
+  "sideEffects": [
+    "style/**/*"
+  ],
+  "main": "lib/index.js",
+  "types": "lib/index.d.ts",
+  "style": "style/index.css",
+  "directories": {
+    "lib": "lib/"
+  },
+  "files": [
+    "lib/*.d.ts",
+    "lib/*.js.map",
+    "lib/*.js",
+    "style/*.css",
+    "style/images/*.svg",
+    "schema/*.json",
+    "style/index.js",
+    "src/**/*.{ts,tsx}"
+  ],
+  "scripts": {
+    "build": "tsc -b",
+    "clean": "rimraf lib && rimraf tsconfig.tsbuildinfo",
+    "watch": "tsc -b --watch"
+  },
+  "dependencies": {
+    "@jupyterlab/application": "^4.5.1",
+    "@jupyterlab/apputils": "^4.6.1",
+    "@jupyterlab/coreutils": "^6.5.1",
+    "@jupyterlab/docregistry": "^4.5.1",
+    "@jupyterlab/mainmenu": "^4.5.1",
+    "@jupyterlab/rendermime-interfaces": "^3.13.1",
+    "@jupyterlab/services": "^7.5.1",
+    "@jupyterlab/settingregistry": "^4.5.1",
+    "@jupyterlab/statedb": "^4.5.1",
+    "@jupyterlab/statusbar": "^4.5.1",
+    "@jupyterlab/translation": "^4.5.1",
+    "@jupyterlab/ui-components": "^4.5.1",
+    "@jupyterlab/workspaces": "^4.5.1",
+    "@lumino/algorithm": "^2.0.4",
+    "@lumino/commands": "^2.3.3",
+    "@lumino/coreutils": "^2.2.2",
+    "@lumino/disposable": "^2.1.5",
+    "@lumino/domutils": "^2.0.4",
+    "@lumino/polling": "^2.1.5",
+    "@lumino/widgets": "^2.7.2",
+    "react": "^18.2.0",
+    "react-dom": "^18.2.0",
+    "react-toastify": "^9.0.8"
+  },
+  "devDependencies": {
+    "rimraf": "~5.0.5",
+    "typescript": "~5.5.4"
+  },
+  "publishConfig": {
+    "access": "public"
+  },
+  "jupyterlab": {
+    "extension": true,
+    "schemaDir": "schema"
+  },
+  "styleModule": "style/index.js"
+}

share/jupyter/lab/schemas/@jupyterlab/apputils-extension/palette.json

@@ -0,0 +1,40 @@
+{
+  "title": "Command Palette",
+  "description": "Command palette settings.",
+  "jupyter.lab.setting-icon": "ui-components:palette",
+  "jupyter.lab.setting-icon-label": "Command Palette",
+  "jupyter.lab.menus": {
+    "main": [
+      {
+        "id": "jp-mainmenu-view",
+        "items": [
+          {
+            "command": "apputils:activate-command-palette",
+            "rank": 0
+          },
+          {
+            "type": "separator",
+            "rank": 0
+          }
+        ]
+      }
+    ]
+  },
+  "jupyter.lab.shortcuts": [
+    {
+      "command": "apputils:activate-command-palette",
+      "keys": ["Accel Shift C"],
+      "selector": "body"
+    }
+  ],
+  "properties": {
+    "modal": {
+      "title": "Modal Command Palette",
+      "description": "Whether the command palette should be modal or in the left panel.",
+      "type": "boolean",
+      "default": true
+    }
+  },
+  "type": "object",
+  "additionalProperties": false
+}

share/jupyter/lab/schemas/@jupyterlab/apputils-extension/print.json

@@ -0,0 +1,31 @@
+{
+  "title": "Print",
+  "description": "Print settings.",
+  "jupyter.lab.menus": {
+    "main": [
+      {
+        "id": "jp-mainmenu-file",
+        "items": [
+          {
+            "type": "separator",
+            "rank": 98
+          },
+          {
+            "command": "apputils:print",
+            "rank": 98
+          }
+        ]
+      }
+    ]
+  },
+  "jupyter.lab.shortcuts": [
+    {
+      "command": "apputils:print",
+      "keys": ["Accel P"],
+      "selector": "body"
+    }
+  ],
+  "additionalProperties": false,
+  "properties": {},
+  "type": "object"
+}

share/jupyter/lab/schemas/@jupyterlab/apputils-extension/sanitizer.json

@@ -0,0 +1,31 @@
+{
+  "title": "HTML Sanitizer",
+  "description": "HTML Sanitizer settings.",
+  "jupyter.lab.setting-icon": "ui-components:html5",
+  "additionalProperties": false,
+  "properties": {
+    "allowedSchemes": {
+      "title": "Allowed URL Scheme",
+      "description": "Scheme allowed by the HTML sanitizer.",
+      "type": "array",
+      "uniqueItems": true,
+      "items": {
+        "type": "string"
+      },
+      "default": ["http", "https", "ftp", "mailto", "tel"]
+    },
+    "autolink": {
+      "type": "boolean",
+      "title": "Autolink URL replacement",
+      "description": "Whether to replace URLs with links or not.",
+      "default": true
+    },
+    "allowNamedProperties": {
+      "type": "boolean",
+      "title": "Allow named properties",
+      "description": "Whether to allow untrusted elements to include `name` and `id` attributes. These attributes are stripped by default to prevent DOM clobbering attacks.",
+      "default": false
+    }
+  },
+  "type": "object"
+}

share/jupyter/lab/schemas/@jupyterlab/apputils-extension/sessionDialogs.json

@@ -0,0 +1,14 @@
+{
+  "title": "Kernel dialogs",
+  "description": "Kernel dialogs settings.",
+  "additionalProperties": false,
+  "properties": {
+    "skipKernelRestartDialog": {
+      "title": "Skip kernel restart Dialog",
+      "description": "Whether the kernel restart confirmation dialog is skipped when restarting the kernel.",
+      "type": "boolean",
+      "default": false
+    }
+  },
+  "type": "object"
+}

share/jupyter/lab/schemas/@jupyterlab/apputils-extension/themes.json

@@ -0,0 +1,155 @@
+{
+  "title": "Theme",
+  "jupyter.lab.setting-icon-label": "Theme Manager",
+  "jupyter.lab.menus": {
+    "main": [
+      {
+        "id": "jp-mainmenu-settings",
+        "items": [
+          {
+            "type": "submenu",
+            "submenu": {
+              "id": "jp-mainmenu-settings-apputilstheme",
+              "label": "Theme",
+              "items": [
+                { "type": "separator" },
+                {
+                  "command": "apputils:adaptive-theme"
+                },
+                { "type": "separator" },
+                {
+                  "command": "apputils:theme-scrollbars"
+                },
+                { "type": "separator" },
+                {
+                  "command": "apputils:incr-font-size",
+                  "args": {
+                    "key": "code-font-size"
+                  }
+                },
+                {
+                  "command": "apputils:decr-font-size",
+                  "args": {
+                    "key": "code-font-size"
+                  }
+                },
+                { "type": "separator" },
+                {
+                  "command": "apputils:incr-font-size",
+                  "args": {
+                    "key": "content-font-size1"
+                  }
+                },
+                {
+                  "command": "apputils:decr-font-size",
+                  "args": {
+                    "key": "content-font-size1"
+                  }
+                },
+                { "type": "separator" },
+                {
+                  "command": "apputils:incr-font-size",
+                  "args": {
+                    "key": "ui-font-size1"
+                  }
+                },
+                {
+                  "command": "apputils:decr-font-size",
+                  "args": {
+                    "key": "ui-font-size1"
+                  }
+                }
+              ]
+            },
+            "rank": 0
+          }
+        ]
+      }
+    ]
+  },
+  "description": "Theme manager settings.",
+  "type": "object",
+  "additionalProperties": false,
+  "definitions": {
+    "cssOverrides": {
+      "type": "object",
+      "additionalProperties": false,
+      "description": "The description field of each item is the CSS property that will be used to validate an override's value",
+      "properties": {
+        "code-font-family": {
+          "type": ["string", "null"],
+          "description": "font-family"
+        },
+        "code-font-size": {
+          "type": ["string", "null"],
+          "description": "font-size"
+        },
+
+        "content-font-family": {
+          "type": ["string", "null"],
+          "description": "font-family"
+        },
+        "content-font-size1": {
+          "type": ["string", "null"],
+          "description": "font-size"
+        },
+
+        "ui-font-family": {
+          "type": ["string", "null"],
+          "description": "font-family"
+        },
+        "ui-font-size1": {
+          "type": ["string", "null"],
+          "description": "font-size"
+        }
+      }
+    }
+  },
+  "properties": {
+    "theme": {
+      "type": "string",
+      "title": "Selected Theme",
+      "description": "Application-level visual styling theme. Ignored when Adaptive Theme is enabled.",
+      "default": "JupyterLab Light"
+    },
+    "adaptive-theme": {
+      "type": "boolean",
+      "title": "Adaptive Theme",
+      "description": "Synchronize visual styling theme with system settings",
+      "default": false
+    },
+    "preferred-light-theme": {
+      "type": "string",
+      "title": "Preferred Light Theme",
+      "description": "Application-level light visual styling theme. Ignored when Adaptive Theme is disabled.",
+      "default": "JupyterLab Light"
+    },
+    "preferred-dark-theme": {
+      "type": "string",
+      "title": "Preferred Dark Theme",
+      "description": "Application-level dark visual styling theme. Ignored when Adaptive Theme is disabled.",
+      "default": "JupyterLab Dark"
+    },
+    "theme-scrollbars": {
+      "type": "boolean",
+      "title": "Scrollbar Theming",
+      "description": "Enable/disable styling of the application scrollbars",
+      "default": false
+    },
+    "overrides": {
+      "title": "Theme CSS Overrides",
+      "description": "Override theme CSS variables by setting key-value pairs here",
+      "$ref": "#/definitions/cssOverrides",
+      "default": {
+        "code-font-family": null,
+        "code-font-size": null,
+
+        "content-font-family": null,
+        "content-font-size1": null,
+
+        "ui-font-family": null,
+        "ui-font-size1": null
+      }
+    }
+  }
+}

share/jupyter/lab/schemas/@jupyterlab/apputils-extension/utilityCommands.json

@@ -0,0 +1,35 @@
+{
+  "title": "Shortcuts Help",
+  "description": "Shortcut help settings.",
+  "jupyter.lab.menus": {
+    "main": [
+      {
+        "id": "jp-mainmenu-help",
+        "items": [
+          {
+            "type": "separator",
+            "rank": 0.1
+          },
+          {
+            "command": "apputils:display-shortcuts",
+            "rank": 0.1
+          },
+          {
+            "type": "separator",
+            "rank": 0.1
+          }
+        ]
+      }
+    ]
+  },
+  "jupyter.lab.shortcuts": [
+    {
+      "command": "apputils:display-shortcuts",
+      "keys": ["Accel Shift H"],
+      "selector": "body"
+    }
+  ],
+  "properties": {},
+  "type": "object",
+  "additionalProperties": false
+}

share/jupyter/lab/schemas/@jupyterlab/cell-toolbar-extension/package.json.orig

@@ -0,0 +1,55 @@
+{
+  "name": "@jupyterlab/cell-toolbar-extension",
+  "version": "4.5.1",
+  "description": "Extension for cell toolbar adapted from jlab-enhanced-cell-toolbar",
+  "homepage": "https://github.com/jupyterlab/jupyterlab",
+  "bugs": {
+    "url": "https://github.com/jupyterlab/jupyterlab/issues"
+  },
+  "repository": {
+    "type": "git",
+    "url": "https://github.com/jupyterlab/jupyterlab.git"
+  },
+  "license": "BSD-3-Clause",
+  "author": "Project Jupyter",
+  "sideEffects": [
+    "style/**/*"
+  ],
+  "main": "lib/index.js",
+  "types": "lib/index.d.ts",
+  "style": "style/index.css",
+  "directories": {
+    "lib": "lib/"
+  },
+  "files": [
+    "lib/**/*.{d.ts,eot,gif,html,jpg,js,js.map,json,png,svg,woff2,ttf}",
+    "schema/*.json",
+    "style/**/*.{css,eot,gif,html,jpg,json,png,svg,woff2,ttf}",
+    "style/index.js",
+    "src/**/*.{ts,tsx}"
+  ],
+  "scripts": {
+    "build": "tsc -b",
+    "clean": "rimraf lib && rimraf tsconfig.tsbuildinfo",
+    "watch": "tsc -b --watch"
+  },
+  "dependencies": {
+    "@jupyterlab/application": "^4.5.1",
+    "@jupyterlab/apputils": "^4.6.1",
+    "@jupyterlab/cell-toolbar": "^4.5.1",
+    "@jupyterlab/settingregistry": "^4.5.1",
+    "@jupyterlab/translation": "^4.5.1"
+  },
+  "devDependencies": {
+    "rimraf": "~5.0.5",
+    "typescript": "~5.5.4"
+  },
+  "publishConfig": {
+    "access": "public"
+  },
+  "jupyterlab": {
+    "extension": true,
+    "schemaDir": "schema"
+  },
+  "styleModule": "style/index.js"
+}

share/jupyter/lab/schemas/@jupyterlab/cell-toolbar-extension/plugin.json

@@ -0,0 +1,101 @@
+{
+  "$schema": "http://json-schema.org/draft-07/schema",
+  "title": "Cell Toolbar",
+  "description": "Cell Toolbar Settings.",
+  "jupyter.lab.toolbars": {
+    "Cell": [
+      {
+        "name": "duplicate-cell",
+        "command": "notebook:duplicate-below"
+      },
+      { "name": "move-cell-up", "command": "notebook:move-cell-up" },
+      { "name": "move-cell-down", "command": "notebook:move-cell-down" },
+      {
+        "name": "insert-cell-above",
+        "command": "notebook:insert-cell-above"
+      },
+      {
+        "name": "insert-cell-below",
+        "command": "notebook:insert-cell-below"
+      },
+      {
+        "command": "notebook:delete-cell",
+        "icon": "ui-components:delete",
+        "name": "delete-cell"
+      }
+    ]
+  },
+  "jupyter.lab.transform": true,
+  "properties": {
+    "showToolbar": {
+      "title": "Show cell toolbar",
+      "description": "Show a toolbar inside the active cell, if there is enough room for one",
+      "type": "boolean",
+      "default": true
+    },
+    "toolbar": {
+      "title": "List of toolbar items",
+      "description": "An item is defined by a 'name', a 'command' name, and an 'icon' name",
+      "type": "array",
+      "items": {
+        "$ref": "#/definitions/toolbarItem"
+      },
+      "default": []
+    }
+  },
+  "additionalProperties": false,
+  "type": "object",
+  "definitions": {
+    "toolbarItem": {
+      "properties": {
+        "name": {
+          "title": "Unique name",
+          "type": "string"
+        },
+        "args": {
+          "title": "Command arguments",
+          "type": "object"
+        },
+        "command": {
+          "title": "Command id",
+          "type": "string",
+          "default": ""
+        },
+        "disabled": {
+          "title": "Whether the item is ignored or not",
+          "type": "boolean",
+          "default": false
+        },
+        "icon": {
+          "title": "Item icon id",
+          "description": "If defined, it will override the command icon",
+          "type": "string"
+        },
+        "label": {
+          "title": "Item label",
+          "description": "If defined, it will override the command label",
+          "type": "string"
+        },
+        "caption": {
+          "title": "Item caption",
+          "description": "If defined, it will override the command caption",
+          "type": "string"
+        },
+        "type": {
+          "title": "Item type",
+          "type": "string",
+          "enum": ["command", "spacer"]
+        },
+        "rank": {
+          "title": "Item rank",
+          "type": "number",
+          "minimum": 0,
+          "default": 50
+        }
+      },
+      "required": ["name"],
+      "additionalProperties": false,
+      "type": "object"
+    }
+  }
+}

share/jupyter/lab/schemas/@jupyterlab/celltags-extension/package.json.orig

@@ -0,0 +1,63 @@
+{
+  "name": "@jupyterlab/celltags-extension",
+  "version": "4.5.1",
+  "description": "An extension for manipulating tags in cell metadata",
+  "keywords": [
+    "jupyter",
+    "jupyterlab",
+    "jupyterlab-extension"
+  ],
+  "homepage": "https://github.com/jupyterlab/jupyterlab",
+  "bugs": {
+    "url": "https://github.com/jupyterlab/jupyterlab/issues"
+  },
+  "repository": {
+    "type": "git",
+    "url": "https://github.com/jupyterlab/jupyterlab.git"
+  },
+  "license": "BSD-3-Clause",
+  "author": "Project Jupyter",
+  "sideEffects": [
+    "style/*.css",
+    "style/index.js"
+  ],
+  "main": "lib/index.js",
+  "types": "lib/index.d.ts",
+  "style": "style/index.css",
+  "directories": {
+    "lib": "lib/"
+  },
+  "files": [
+    "lib/*.{d.ts,js,js.map}",
+    "style/*.css",
+    "style/index.js",
+    "src/**/*.{ts,tsx}",
+    "schema/*.json"
+  ],
+  "scripts": {
+    "build": "tsc",
+    "clean": "rimraf lib && rimraf tsconfig.tsbuildinfo",
+    "watch": "tsc -b --watch"
+  },
+  "dependencies": {
+    "@jupyterlab/application": "^4.5.1",
+    "@jupyterlab/notebook": "^4.5.1",
+    "@jupyterlab/translation": "^4.5.1",
+    "@jupyterlab/ui-components": "^4.5.1",
+    "@lumino/algorithm": "^2.0.4",
+    "@rjsf/utils": "^5.13.4",
+    "react": "^18.2.0"
+  },
+  "devDependencies": {
+    "rimraf": "~5.0.5",
+    "typescript": "~5.5.4"
+  },
+  "publishConfig": {
+    "access": "public"
+  },
+  "jupyterlab": {
+    "extension": true,
+    "schemaDir": "schema"
+  },
+  "styleModule": "style/index.js"
+}

share/jupyter/lab/schemas/@jupyterlab/celltags-extension/plugin.json

@@ -0,0 +1,33 @@
+{
+  "type": "object",
+  "title": "Common tools",
+  "description": "Setting for the common tools",
+  "jupyter.lab.metadataforms": [
+    {
+      "id": "commonToolsSection",
+      "label": "Common tools",
+      "metadataSchema": {
+        "type": "object",
+        "properties": {
+          "/tags": {
+            "title": "Cell tag",
+            "type": "array",
+            "default": [],
+            "items": {
+              "type": "string"
+            }
+          }
+        }
+      },
+      "uiSchema": {
+        "ui:order": ["_CELL-TOOL", "/tags", "*"]
+      },
+      "metadataOptions": {
+        "/tags": {
+          "customRenderer": "@jupyterlab/celltags-extension:plugin.renderer"
+        }
+      }
+    }
+  ],
+  "additionalProperties": false
+}

share/jupyter/lab/schemas/@jupyterlab/codemirror-extension/package.json.orig

@@ -0,0 +1,75 @@
+{
+  "name": "@jupyterlab/codemirror-extension",
+  "version": "4.5.1",
+  "description": "JupyterLab - CodeMirror Provider Extension",
+  "homepage": "https://github.com/jupyterlab/jupyterlab",
+  "bugs": {
+    "url": "https://github.com/jupyterlab/jupyterlab/issues"
+  },
+  "repository": {
+    "type": "git",
+    "url": "https://github.com/jupyterlab/jupyterlab.git"
+  },
+  "license": "BSD-3-Clause",
+  "author": "Project Jupyter",
+  "sideEffects": [
+    "style/**/*.css",
+    "style/index.js"
+  ],
+  "main": "lib/index.js",
+  "types": "lib/index.d.ts",
+  "style": "style/index.css",
+  "directories": {
+    "lib": "lib/"
+  },
+  "files": [
+    "lib/*.d.ts",
+    "lib/*.js.map",
+    "lib/*.js",
+    "schema/*.json",
+    "style/**/*.css",
+    "style/index.js",
+    "src/**/*.{ts,tsx}"
+  ],
+  "scripts": {
+    "build": "tsc -b",
+    "clean": "rimraf lib && rimraf tsconfig.tsbuildinfo",
+    "watch": "tsc -b --watch"
+  },
+  "dependencies": {
+    "@codemirror/commands": "^6.8.1",
+    "@codemirror/lang-markdown": "^6.3.2",
+    "@codemirror/language": "^6.11.0",
+    "@codemirror/legacy-modes": "^6.5.1",
+    "@codemirror/search": "^6.5.10",
+    "@codemirror/view": "^6.38.1",
+    "@jupyter/ydoc": "^3.1.0",
+    "@jupyterlab/application": "^4.5.1",
+    "@jupyterlab/apputils": "^4.6.1",
+    "@jupyterlab/codeeditor": "^4.5.1",
+    "@jupyterlab/codemirror": "^4.5.1",
+    "@jupyterlab/notebook": "^4.5.1",
+    "@jupyterlab/settingregistry": "^4.5.1",
+    "@jupyterlab/statusbar": "^4.5.1",
+    "@jupyterlab/translation": "^4.5.1",
+    "@jupyterlab/ui-components": "^4.5.1",
+    "@lumino/coreutils": "^2.2.2",
+    "@lumino/widgets": "^2.7.2",
+    "@rjsf/utils": "^5.13.4",
+    "@rjsf/validator-ajv8": "^5.13.4",
+    "react": "^18.2.0"
+  },
+  "devDependencies": {
+    "@types/react": "^18.0.26",
+    "rimraf": "~5.0.5",
+    "typescript": "~5.5.4"
+  },
+  "publishConfig": {
+    "access": "public"
+  },
+  "jupyterlab": {
+    "extension": true,
+    "schemaDir": "schema"
+  },
+  "styleModule": "style/index.js"
+}

share/jupyter/lab/schemas/@jupyterlab/codemirror-extension/plugin.json

@@ -0,0 +1,85 @@
+{
+  "jupyter.lab.setting-icon": "ui-components:text-editor",
+  "jupyter.lab.setting-icon-label": "CodeMirror",
+  "jupyter.lab.shortcuts": [
+    {
+      "command": "codemirror:delete-line",
+      "keys": ["Accel D"],
+      "selector": ".cm-content"
+    },
+    {
+      "command": "codemirror:delete-line",
+      "keys": ["Accel Shift K"],
+      "selector": ".cm-content"
+    },
+    {
+      "command": "codemirror:toggle-block-comment",
+      "keys": ["Alt A"],
+      "selector": ".cm-content"
+    },
+    {
+      "command": "codemirror:toggle-comment",
+      "keys": ["Accel /"],
+      "selector": ".cm-content"
+    },
+    {
+      "command": "codemirror:select-next-occurrence",
+      "keys": ["Accel Shift D"],
+      "selector": ".cm-content"
+    }
+  ],
+  "jupyter.lab.menus": {
+    "main": [
+      {
+        "id": "jp-mainmenu-view",
+        "items": [
+          {
+            "type": "submenu",
+            "rank": 10,
+            "submenu": {
+              "id": "jp-mainmenu-codefold",
+              "label": "Code Folding",
+              "items": [
+                {
+                  "command": "codemirror:fold-current",
+                  "rank": 1
+                },
+                {
+                  "command": "codemirror:unfold-current",
+                  "rank": 2
+                },
+                {
+                  "command": "codemirror:fold-subregions",
+                  "rank": 3
+                },
+                {
+                  "command": "codemirror:unfold-subregions",
+                  "rank": 4
+                },
+                {
+                  "command": "codemirror:fold-all",
+                  "rank": 5
+                },
+                {
+                  "command": "codemirror:unfold-all",
+                  "rank": 6
+                }
+              ]
+            }
+          }
+        ]
+      }
+    ]
+  },
+  "title": "CodeMirror",
+  "description": "Text editor settings for all CodeMirror editors.",
+  "properties": {
+    "defaultConfig": {
+      "default": {},
+      "title": "Default editor configuration",
+      "description": "Base configuration used by all CodeMirror editors.",
+      "type": "object"
+    }
+  },
+  "type": "object"
+}

share/jupyter/lab/schemas/@jupyterlab/completer-extension/inline-completer.json

@@ -0,0 +1,106 @@
+{
+  "title": "Inline Completer",
+  "description": "Inline completer settings.",
+  "jupyter.lab.setting-icon": "completer:inline",
+  "jupyter.lab.setting-icon-label": "Inline Completer",
+  "jupyter.lab.transform": true,
+  "jupyter.lab.shortcuts": [
+    {
+      "command": "inline-completer:next",
+      "keys": ["Alt ]"],
+      "selector": ".jp-mod-completer-enabled",
+      "preventDefault": false
+    },
+    {
+      "command": "inline-completer:previous",
+      "keys": ["Alt ["],
+      "selector": ".jp-mod-completer-enabled",
+      "preventDefault": false
+    },
+    {
+      "command": "inline-completer:accept",
+      "keys": ["Tab"],
+      "selector": ".jp-mod-inline-completer-active"
+    },
+    {
+      "command": "inline-completer:accept",
+      "keys": ["Alt End"],
+      "selector": ".jp-mod-inline-completer-active"
+    },
+    {
+      "command": "inline-completer:invoke",
+      "keys": ["Alt \\"],
+      "selector": ".jp-mod-completer-enabled",
+      "preventDefault": false
+    }
+  ],
+  "properties": {
+    "providers": {
+      "title": "Inline completion providers",
+      "type": "object",
+      "default": {}
+    },
+    "showWidget": {
+      "title": "Show widget",
+      "description": "When to show the inline completer widget.",
+      "type": "string",
+      "oneOf": [
+        { "const": "always", "title": "Always" },
+        { "const": "onHover", "title": "On hover" },
+        { "const": "never", "title": "Never" }
+      ],
+      "default": "onHover"
+    },
+    "showShortcuts": {
+      "title": "Show shortcuts in the widget",
+      "description": "Whether to show shortcuts in the inline completer widget.",
+      "type": "boolean",
+      "default": true
+    },
+    "suppressIfTabCompleterActive": {
+      "title": "Suppress when the tab completer is active",
+      "description": "Whether to suppress the inline completer when the tab completer suggestions are shown.",
+      "type": "boolean",
+      "default": true
+    },
+    "streamingAnimation": {
+      "title": "Streaming animation",
+      "description": "Transition effect used when streaming tokens from model.",
+      "type": "string",
+      "oneOf": [
+        { "const": "none", "title": "None" },
+        { "const": "uncover", "title": "Uncover" }
+      ],
+      "default": "uncover"
+    },
+    "minLines": {
+      "title": "Reserve lines for inline completion",
+      "description": "Number of lines to reserve for the ghost text with inline completion suggestion.",
+      "type": "number",
+      "default": 0,
+      "minimum": 0
+    },
+    "maxLines": {
+      "title": "Limit inline completion lines",
+      "description": "Number of lines of inline completion to show before collapsing. Setting zero disables the limit.",
+      "type": "number",
+      "default": 0,
+      "minimum": 0
+    },
+    "reserveSpaceForLongest": {
+      "title": "Reserve space for the longest candidate",
+      "description": "When multiple completions are returned, reserve blank space for up to as many lines as in the longest completion candidate to avoid resizing editor when cycling between the suggestions.",
+      "type": "boolean",
+      "default": false
+    },
+    "editorResizeDelay": {
+      "title": "Editor resize delay",
+      "description": "When an inline completion gets cancelled the editor may change its size rapidly. When typing in the editor, the completions may get dismissed frequently causing a noticeable jitter of the editor height. Adding a delay prevents the jitter on typing. The value should be in milliseconds.",
+      "type": "number",
+      "default": 1000,
+      "minimum": 0
+    }
+  },
+  "additionalProperties": false,
+  "type": "object"
+}

share/jupyter/lab/schemas/@jupyterlab/completer-extension/manager.json

@@ -0,0 +1,50 @@
+{
+  "title": "Code Completion",
+  "description": "Code Completion settings.",
+  "jupyter.lab.setting-icon": "completer:widget",
+  "jupyter.lab.setting-icon-label": "Code Completer",
+  "jupyter.lab.transform": true,
+  "properties": {
+    "availableProviders": {
+      "title": "Completion providers rank setting.",
+      "description": "Providers with higher rank will be shown before the ones with lower rank, providers with negative rank are disabled.",
+      "type": "object",
+      "patternProperties": {
+        "^.*$": {
+          "type": "integer"
+        }
+      },
+      "additionalProperties": false,
+      "default": {
+        "CompletionProvider:context": 500,
+        "CompletionProvider:kernel": 550
+      }
+    },
+    "providerTimeout": {
+      "title": "Default timeout for a provider.",
+      "description": "If a provider can not return the response for a completer request before timeout, the result of this provider will be ignored. Value is in millisecond",
+      "type": "number",
+      "default": 1000
+    },
+    "showDocumentationPanel": {
+      "title": "Show the documentation panel.",
+      "description": "Documentation panel setting.",
+      "type": "boolean",
+      "default": false
+    },
+    "autoCompletion": {
+      "title": "Enable autocompletion.",
+      "description": "Autocompletion setting.",
+      "type": "boolean",
+      "default": false
+    },
+    "suppressIfInlineCompleterActive": {
+      "title": "Suppress when the inline completer is active",
+      "description": "Whether to suppress the tab completer when inline completions are presented.",
+      "type": "boolean",
+      "default": true
+    }
+  },
+  "additionalProperties": false,
+  "type": "object"
+}

share/jupyter/lab/schemas/@jupyterlab/completer-extension/package.json.orig

@@ -0,0 +1,63 @@
+{
+  "name": "@jupyterlab/completer-extension",
+  "version": "4.5.1",
+  "description": "JupyterLab - Completer Extension",
+  "homepage": "https://github.com/jupyterlab/jupyterlab",
+  "bugs": {
+    "url": "https://github.com/jupyterlab/jupyterlab/issues"
+  },
+  "repository": {
+    "type": "git",
+    "url": "https://github.com/jupyterlab/jupyterlab.git"
+  },
+  "license": "BSD-3-Clause",
+  "author": "Project Jupyter",
+  "sideEffects": [
+    "style/**/*.css",
+    "style/index.js"
+  ],
+  "main": "lib/index.js",
+  "types": "lib/index.d.ts",
+  "style": "style/index.css",
+  "directories": {
+    "lib": "lib/"
+  },
+  "files": [
+    "lib/*.d.ts",
+    "lib/*.js.map",
+    "lib/*.js",
+    "schema/*.json",
+    "style/**/*.css",
+    "style/index.js",
+    "src/**/*.{ts,tsx}"
+  ],
+  "scripts": {
+    "build": "tsc -b",
+    "clean": "rimraf lib && rimraf tsconfig.tsbuildinfo",
+    "watch": "tsc -b --watch"
+  },
+  "dependencies": {
+    "@jupyterlab/application": "^4.5.1",
+    "@jupyterlab/codeeditor": "^4.5.1",
+    "@jupyterlab/completer": "^4.5.1",
+    "@jupyterlab/settingregistry": "^4.5.1",
+    "@jupyterlab/translation": "^4.5.1",
+    "@jupyterlab/ui-components": "^4.5.1",
+    "@lumino/commands": "^2.3.3",
+    "@lumino/coreutils": "^2.2.2",
+    "@rjsf/utils": "^5.13.4",
+    "react": "^18.2.0"
+  },
+  "devDependencies": {
+    "rimraf": "~5.0.5",
+    "typescript": "~5.5.4"
+  },
+  "publishConfig": {
+    "access": "public"
+  },
+  "jupyterlab": {
+    "extension": true,
+    "schemaDir": "schema"
+  },
+  "styleModule": "style/index.js"
+}

share/jupyter/lab/schemas/@jupyterlab/console-extension/completer.json

@@ -0,0 +1,14 @@
+{
+  "title": "Console Completer",
+  "description": "Console completer settings.",
+  "jupyter.lab.shortcuts": [
+    {
+      "command": "completer:invoke-console",
+      "keys": ["Tab"],
+      "selector": ".jp-CodeConsole-promptCell .jp-mod-completer-enabled:not(.jp-mod-at-line-beginning)"
+    }
+  ],
+  "properties": {},
+  "additionalProperties": false,
+  "type": "object"
+}